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Replace calls to repo-updater ListRepos method

Administrator requested to merge asdine/replace-calls-to-ListRepos into main

Created by: asdine

This replaces all the calls to repo-updater's Store#ListRepos method from outside of repo-updater. These calls were replaced by the internal/db/RepoStore#List and internal/db/RepoStore#Get method.

Fixes #14710

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