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codeintel: Refactor upload package

Administrator requested to merge ef/update-lsif-upload-package into main

Created by: efritz

This gives some love to the ./lib/codeintel/utils package and transforms it into the ./lib/codeintel/upload package. New code was kept separate in order to make reviewing easy. Please review by commit.

This gives some structure to the output, and also uses the ./lib/output package used by batch changes to give our utilities a more consistent feel.

Sibling src-cli PR: https://github.com/sourcegraph/src-cli/pull/541

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