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Replace calls to repo-updater InsertRepos to RepoStore Create

Administrator requested to merge replace-calls-torepoupdater-insert into main

Created by: asdine

This replaces all the calls to repo-updater's Store#InsertRepos method from outside of repo-updater. These calls were replaced by the internal/db/RepoStore#Create method.

Note: This PR is the first of many small changes that will progressively decouple repo-updater from the rest of the code.

Fixes #14711

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