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codeintel: Fix upload timestamps

Administrator requested to merge fix-upload-timestamps into master

Created by: efritz

Closes https://github.com/sourcegraph/sourcegraph/issues/9596.

The issue is that now() used in a long-running transaction will always give you the start of a transaction. This caused the start and finish timestamps of an upload to be basically the same value. Using clock_timetsamp() over now() in long-running transaction will give you the actual time.

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