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repo-updater: Use IdleConnTimeout for GitHub to avoid EOF errors

Warren Gifford requested to merge core/idle-conn-timeout into master

Created by: mrnugget

This is a follow-up to #4345 and makes sure that the GitHub source used in repo-updater uses the same IdleConnTimeout that github-proxy uses, making repo-updater resilient against this error without github-proxy

Test plan: go test

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