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Code monitors: fix repo-aware creation of code monitors

Warren Gifford requested to merge cc/fix-code-monitor-creation into main

Created by: camdencheek

With the new optimization passes, we'd fail to create new repo-aware code monitors because we'd have noop jobs in the job tree that were not explicitly allowed. This fixes that and adds a test that ensures that normal queries pass this validation step.

Test plan

Added a test.

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