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Run paginated queries in SetClonedRepos

Warren Gifford requested to merge cloud/fix-setClonedRepos into main

Created by: asdine

This PR modifies the SetClonedRepos method to use the same query as before but on 400k repos pages. On Cloud, this means running about 4 queries (~around 1.3M cloned repos). This should fix the pq: temporary file size exceeds temp_file_limit error by reducing the number of temporary files.

Fixes #14431 (closed)

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