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Revert "repo-updater: Improve performance when calculating notClonedCount (#4801)"

Administrator requested to merge core/revert-clone-count into master

Created by: mrnugget

This reverts #4801 due to a bug that it contains. Full description can be found in this comment: https://github.com/sourcegraph/sourcegraph/pull/4801#issuecomment-508682077

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