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database: upsertRepoPendingPermissionsBatchQuery => single-row upsertRepoPendingPermissionsQuery

Administrator requested to merge database/repo-pending-single into main

Created by: bobheadxi

This is currently only used to update a single entry anyways - merge this into the existing upsertRepoPermissionsQuery, which now accepts an updateSyncedAt bool. rename to upsertRepoPendingPermissionsQuery and only allow a single argument.

(I realized that the two are very different queries)

Part https://github.com/sourcegraph/sourcegraph/issues/24851 - trying to find queries at risk of hitting parameter limits.

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